travis_fold:start:worker_info Worker information hostname: 42d641bb-3769-4aa8-9e9f-e637e575df50@1.production-1-worker-com-gce-dxrb version: v6.2.0 https://github.com/travis-ci/worker/tree/5e5476e01646095f48eec13196fdb3faf8f5cbf7 instance: travis-job-8149f6ff-0c4e-45ca-958b-5cfcd22d05e4 travis-ci-amethyst-trusty-1512508224-986baf0 (via amqp) startup: 6.328889176s travis_fold:end:worker_info travis_fold:start:system_info Build system information Build language: r Build group: stable Build dist: trusty Build id: 99292764 Job id: 174409666 Runtime kernel version: 4.4.0-101-generic travis-build version: 5549281c6 Build image provisioning date and time Tue Dec 5 21:46:03 UTC 2017 Operating System Details Distributor ID: Ubuntu Description: Ubuntu 14.04.5 LTS Release: 14.04 Codename: trusty Cookbooks Version 7c2c6a6 https://github.com/travis-ci/travis-cookbooks/tree/7c2c6a6 git version git version 2.15.1 bash version GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu) gcc version gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. docker version Client: Version: 17.09.0-ce API version: 1.32 Go version: go1.8.3 Git commit: afdb6d4 Built: Tue Sep 26 22:42:38 2017 OS/Arch: linux/amd64 Server: Version: 17.09.0-ce API version: 1.32 (minimum version 1.12) Go version: go1.8.3 Git commit: afdb6d4 Built: Tue Sep 26 22:41:20 2017 OS/Arch: linux/amd64 Experimental: false clang version clang version 5.0.0 (tags/RELEASE_500/final) Target: x86_64-unknown-linux-gnu Thread model: posix InstalledDir: /usr/local/clang-5.0.0/bin jq version jq-1.5 bats version Bats 0.4.0 shellcheck version 0.4.6 shfmt version v2.0.0 ccache version ccache version 3.1.9 Copyright (C) 2002-2007 Andrew Tridgell Copyright (C) 2009-2011 Joel Rosdahl This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. cmake version cmake version 3.9.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). heroku version heroku-cli/6.14.39-addc925 (linux-x64) node-v9.2.0 imagemagick version Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org md5deep version 4.2 mercurial version Mercurial Distributed SCM (version 4.2.2) (see https://mercurial-scm.org for more information) Copyright (C) 2005-2017 Matt Mackall and others This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. mysql version mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper openssl version OpenSSL 1.0.1f 6 Jan 2014 packer version Packer v1.0.2 Your version of Packer is out of date! The latest version is 1.1.2. You can update by downloading from www.packer.io postgresql client version psql (PostgreSQL) 9.6.6 ragel version Ragel State Machine Compiler version 6.8 Feb 2013 Copyright (c) 2001-2009 by Adrian Thurston subversion version svn, version 1.8.8 (r1568071) compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu Copyright (C) 2013 The Apache Software Foundation. This software consists of contributions made by many people; see the NOTICE file for more information. Subversion is open source software, see http://subversion.apache.org/ The following repository access (RA) modules are available: * ra_svn : Module for accessing a repository using the svn network protocol. - with Cyrus SASL authentication - handles 'svn' scheme * ra_local : Module for accessing a repository on local disk. - handles 'file' scheme * ra_serf : Module for accessing a repository via WebDAV protocol using serf. - using serf 1.3.3 - handles 'http' scheme - handles 'https' scheme sudo version Sudo version 1.8.9p5 Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux Sudoers policy plugin version 1.8.9p5 Sudoers file grammar version 43 Sudoers path: /etc/sudoers Authentication methods: 'pam' Syslog facility if syslog is being used for logging: authpriv Syslog priority to use when user authenticates successfully: notice Syslog priority to use when user authenticates unsuccessfully: alert Send mail if the user is not in sudoers Use a separate timestamp for each user/tty combo Lecture user the first time they run sudo Root may run sudo Allow some information gathering to give useful error messages Require fully-qualified hostnames in the sudoers file Visudo will honor the EDITOR environment variable Set the LOGNAME and USER environment variables Length at which to wrap log file lines (0 for no wrap): 80 Authentication timestamp timeout: 15.0 minutes Password prompt timeout: 0.0 minutes Number of tries to enter a password: 3 Umask to use or 0777 to use user's: 022 Path to mail program: /usr/sbin/sendmail Flags for mail program: -t Address to send mail to: root Subject line for mail messages: *** SECURITY information for %h *** Incorrect password message: Sorry, try again. Path to authentication timestamp dir: /var/lib/sudo Default password prompt: [sudo] password for %p: Default user to run commands as: root Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin Path to the editor for use by visudo: /usr/bin/editor When to require a password for 'list' pseudocommand: any When to require a password for 'verify' pseudocommand: all File descriptors >= 3 will be closed before executing a command Environment variables to check for sanity: TZ TERM LINGUAS LC_* LANGUAGE LANG COLORTERM Environment variables to remove: RUBYOPT RUBYLIB PYTHONUSERBASE PYTHONINSPECT PYTHONPATH PYTHONHOME TMPPREFIX ZDOTDIR READNULLCMD NULLCMD FPATH PERL5DB PERL5OPT PERL5LIB PERLLIB PERLIO_DEBUG JAVA_TOOL_OPTIONS SHELLOPTS GLOBIGNORE PS4 BASH_ENV ENV TERMCAP TERMPATH TERMINFO_DIRS TERMINFO _RLD* LD_* PATH_LOCALE NLSPATH HOSTALIASES RES_OPTIONS LOCALDOMAIN CDPATH IFS Environment variables to preserve: JAVA_HOME TRAVIS CI DEBIAN_FRONTEND XAUTHORIZATION XAUTHORITY PS2 PS1 PATH LS_COLORS KRB5CCNAME HOSTNAME HOME DISPLAY COLORS Locale to use while parsing sudoers: C Directory in which to store input/output logs: /var/log/sudo-io File in which to store the input/output log: %{seq} Add an entry to the utmp/utmpx file when allocating a pty PAM service name to use PAM service name to use for login shells Create a new PAM session for the command to run in Maximum I/O log sequence number: 0 Local IP address and netmask pairs: 10.240.0.24/255.255.255.255 172.17.0.1/255.255.0.0 Sudoers I/O plugin version 1.8.9p5 gzip version gzip 1.6 Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc. Copyright (C) 1993 Jean-loup Gailly. This is free software. You may redistribute copies of it under the terms of the GNU General Public License . There is NO WARRANTY, to the extent permitted by law. Written by Jean-loup Gailly. zip version Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license. This is Zip 3.0 (July 5th 2008), by Info-ZIP. Currently maintained by E. Gordon. Please send bug reports to the authors using the web page at www.info-zip.org; see README for details. Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip, as of above date; see http://www.info-zip.org/ for other sites. Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013. Zip special compilation options: USE_EF_UT_TIME (store Universal Time) BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010) bzip2 code and library copyright (c) Julian R Seward (See the bzip2 license for terms of use) SYMLINK_SUPPORT (symbolic links supported) LARGE_FILE_SUPPORT (can read and write large files on file system) ZIP64_SUPPORT (use Zip64 to store large files in archives) UNICODE_SUPPORT (store and read UTF-8 Unicode paths) STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field) UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used) [encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3) Encryption notice: The encryption code of this program is not copyrighted and is put in the public domain. It was originally written in Europe and, to the best of our knowledge, can be freely distributed in both source and object forms from any country, including the USA under License Exception TSU of the U.S. Export Administration Regulations (section 740.13(e)) of 6 June 2002. Zip environment options: ZIP: [none] ZIPOPT: [none] vim version VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18) Included patches: 1-52 Extra patches: 8.0.0056 Modified by pkg-vim-maintainers@lists.alioth.debian.org Compiled by buildd@ Huge version without GUI. Features included (+) or not (-): +acl +farsi +mouse_netterm +syntax +arabic +file_in_path +mouse_sgr +tag_binary +autocmd +find_in_path -mouse_sysmouse +tag_old_static -balloon_eval +float +mouse_urxvt -tag_any_white -browse +folding +mouse_xterm -tcl ++builtin_terms -footer +multi_byte +terminfo +byte_offset +fork() +multi_lang +termresponse +cindent +gettext -mzscheme +textobjects -clientserver -hangul_input +netbeans_intg +title -clipboard +iconv +path_extra -toolbar +cmdline_compl +insert_expand -perl +user_commands +cmdline_hist +jumplist +persistent_undo +vertsplit +cmdline_info +keymap +postscript +virtualedit +comments +langmap +printer +visual +conceal +libcall +profile +visualextra +cryptv +linebreak +python +viminfo +cscope +lispindent -python3 +vreplace +cursorbind +listcmds +quickfix +wildignore +cursorshape +localmap +reltime +wildmenu +dialog_con -lua +rightleft +windows +diff +menu -ruby +writebackup +digraphs +mksession +scrollbind -X11 -dnd +modify_fname +signs -xfontset -ebcdic +mouse +smartindent -xim +emacs_tags -mouseshape -sniff -xsmp +eval +mouse_dec +startuptime -xterm_clipboard +ex_extra +mouse_gpm +statusline -xterm_save +extra_search -mouse_jsbterm -sun_workshop -xpm system vimrc file: "$VIM/vimrc" user vimrc file: "$HOME/.vimrc" 2nd user vimrc file: "~/.vim/vimrc" user exrc file: "$HOME/.exrc" fall-back for $VIM: "/usr/share/vim" Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions iptables version iptables v1.4.21 curl version curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3 wget version GNU Wget 1.15 built on linux-gnu. rsync version rsync version 3.1.0 protocol version 31 gimme version v1.2.0 nvm version 0.33.6 perlbrew version /home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.80 phpenv version rbenv 1.1.1-25-g6aa70b6 rvm version rvm 1.29.3 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io] default ruby version ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] CouchDB version couchdb 1.6.1 ElasticSearch version 5.5.0 Installed Firefox version firefox 56.0.2 MongoDB version MongoDB 3.4.10 PhantomJS version 2.1.1 Pre-installed PostgreSQL versions 9.2.24 9.3.20 9.4.15 9.5.10 9.6.6 RabbitMQ Version 3.6.14 Redis version redis-server 4.0.6 riak version 2.2.3 kerl list installations 19.0 18.3 kiex list kiex elixirs elixir-1.2.6 =* elixir-1.3.2 # => - current # =* - current && default # * - default rebar --version rebar 2.6.4 17 20160831_145136 git 2.6.4-dirty perlbrew list 5.22 (5.22.0) 5.22.0 5.22-extras (5.22.4) 5.22-shrplib (5.22.4) 5.22.4 5.24 (5.24.0) 5.24.0 5.24-extras (5.24.3) 5.24-shrplib (5.24.3) 5.24.3 travis_fold:end:system_info  R for Travis-CI is not officially supported, but is community maintained. Please file any issues at https://github.com/travis-ci/travis-ci/issues and mention @jeroen and @jimhester in the issue travis_fold:start:R-install Installing R travis_time:start:1093de56 $ sudo add-apt-repository -y "ppa:marutter/rrutter3.5" gpg: keyring `/tmp/tmp_4wmx5zn/secring.gpg' created gpg: keyring `/tmp/tmp_4wmx5zn/pubring.gpg' created gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com gpg: keyserver timed out gpg: keyserver receive failed: keyserver error travis_time:end:1093de56:start=1548948359915561592,finish=1548948481040234004,duration=121124672412 travis_time:start:1d282211 $ sudo add-apt-repository -y "ppa:marutter/c2d4u3.5" gpg: keyring `/tmp/tmplm8h_epo/secring.gpg' created gpg: keyring `/tmp/tmplm8h_epo/pubring.gpg' created gpg: requesting key B04C661B from hkp server keyserver.ubuntu.com gpg: /tmp/tmplm8h_epo/trustdb.gpg: trustdb created gpg: key B04C661B: public key "Launchpad PPA for marutter" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:1d282211:start=1548948481043689479,finish=1548948482549231406,duration=1505541927 travis_time:start:09d794a8 $ sudo add-apt-repository -y "ppa:ubuntugis/ppa" gpg: keyring `/tmp/tmpw5cuv_k0/secring.gpg' created gpg: keyring `/tmp/tmpw5cuv_k0/pubring.gpg' created gpg: requesting key 314DF160 from hkp server keyserver.ubuntu.com gpg: /tmp/tmpw5cuv_k0/trustdb.gpg: trustdb created gpg: key 314DF160: public key "Launchpad ubuntugis-stable" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:09d794a8:start=1548948482552728030,finish=1548948484516291509,duration=1963563479 travis_time:start:0733bee3 $ sudo add-apt-repository -y "ppa:opencpu/jq" gpg: keyring `/tmp/tmp9q95kp20/secring.gpg' created gpg: keyring `/tmp/tmp9q95kp20/pubring.gpg' created gpg: requesting key 7B3E569E from hkp server keyserver.ubuntu.com gpg: /tmp/tmp9q95kp20/trustdb.gpg: trustdb created gpg: key 7B3E569E: public key "Launchpad PPA for OpenCPU" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:0733bee3:start=1548948484521243821,finish=1548948486034934960,duration=1513691139 travis_time:start:02941400 $ sudo add-apt-repository -y "ppa:kirillshkrogalev/ffmpeg-next" gpg: keyring `/tmp/tmpp_xw1chl/secring.gpg' created gpg: keyring `/tmp/tmpp_xw1chl/pubring.gpg' created gpg: requesting key 8EFE5982 from hkp server keyserver.ubuntu.com gpg: /tmp/tmpp_xw1chl/trustdb.gpg: trustdb created gpg: key 8EFE5982: public key "Launchpad PPA for Kyrill" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:02941400:start=1548948486038994221,finish=1548948487686593400,duration=1647599179 travis_time:start:14694ac6 $ travis_apt_get_update travis_time:end:14694ac6:start=1548948487691546366,finish=1548948598264065657,duration=110572519291 travis_time:start:11602cc4 $ sudo apt-get install -y --no-install-recommends build-essential gcc g++ libblas-dev liblapack-dev libncurses5-dev libreadline-dev libjpeg-dev libpcre3-dev libpng-dev zlib1g-dev libbz2-dev liblzma-dev libicu-dev cdbs qpdf texinfo libssh2-1-dev gfortran Reading package lists... 0% Reading package lists... 100% Reading package lists... Done Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Reading state information... 0% Reading state information... 0% Reading state information... Done Note, selecting 'libpng12-dev' instead of 'libpng-dev' build-essential is already the newest version (11.6ubuntu6). g++ is already the newest version (4:4.8.2-1ubuntu6). g++ set to manually installed. gcc is already the newest version (4:4.8.2-1ubuntu6). gcc set to manually installed. libbz2-dev is already the newest version (1.0.6-5). libjpeg-dev is already the newest version (8c-2ubuntu8). liblzma-dev is already the newest version (5.1.1alpha+20120614-2ubuntu2). liblzma-dev set to manually installed. libncurses5-dev is already the newest version (5.9+20140118-1ubuntu1). libreadline-dev is already the newest version (6.3-4ubuntu2). libpcre3-dev is already the newest version (1:8.31-2ubuntu2.3). libpcre3-dev set to manually installed. The following additional packages will be installed: cpp-4.8 debhelper dh-apparmor dh-translations g++-4.8 gcc-4.8 gcc-4.8-base gfortran-4.8 icu-devtools intltool intltool-debian libasan0 libatomic1 libblas3 libencode-locale-perl libfile-listing-perl libgcc-4.8-dev libgfortran-4.8-dev libgfortran3 libgomp1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libicu52 libintl-perl libio-html-perl libio-socket-ssl-perl libitm1 liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libpng12-0 libqpdf21 libquadmath0 libssh2-1 libstdc++-4.8-dev libstdc++6 libtext-unidecode-perl libtsan0 liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl po-debconf python-scour zlib1g Suggested packages: devscripts gcc-4.8-locales dh-make apparmor-easyprof g++-4.8-multilib gcc-4.8-doc libstdc++6-4.8-dbg gcc-4.8-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan0-dbg libtsan0-dbg libquadmath0-dbg gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc libgfortran3-dbg libdata-dump-perl icu-doc libintl-xs-perl libcrypt-ssleay-perl libstdc++-4.8-doc libauthen-ntlm-perl libmail-box-perl python-rsvg python-cairo texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree Recommended packages: libhtml-format-perl libio-socket-inet6-perl | libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: cdbs debhelper dh-apparmor dh-translations gfortran gfortran-4.8 intltool intltool-debian libblas-dev libblas3 libencode-locale-perl libfile-listing-perl libgfortran-4.8-dev libgfortran3 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libintl-perl libio-html-perl libio-socket-ssl-perl liblapack-dev liblapack3 liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl libqpdf21 libssh2-1 libssh2-1-dev libtext-unidecode-perl liburi-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-parser-perl libxml-sax-base-perl libxml-sax-perl po-debconf python-scour qpdf texinfo The following packages will be upgraded: cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base icu-devtools libasan0 libatomic1 libgcc-4.8-dev libgomp1 libicu-dev libicu52 libitm1 libpng12-0 libpng12-dev libquadmath0 libstdc++-4.8-dev libstdc++6 libtsan0 zlib1g zlib1g-dev 20 upgraded, 46 newly installed, 0 to remove and 270 not upgraded. Need to get 60.7 MB of archives. After this operation, 56.4 MB of additional disk space will be used. 0% [Working] Get:1 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1.1 [166 kB] 0% [1 zlib1g-dev 13.7 kB/166 kB 8%] 1% [Working] Get:2 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 zlib1g amd64 1:1.2.8.dfsg-1ubuntu1.1 [49.8 kB] 1% [2 zlib1g 29.4 kB/49.8 kB 59%] 1% [Working] Get:3 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libpng12-dev amd64 1.2.50-1ubuntu2.14.04.3 [206 kB] 1% [3 libpng12-dev 35.5 kB/206 kB 17%] 1% [Working] Get:4 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libpng12-0 amd64 1.2.50-1ubuntu2.14.04.3 [118 kB] 2% [4 libpng12-0 34.7 kB/118 kB 29%] 2% [Working] Get:5 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libatomic1 amd64 4.8.4-2ubuntu1~14.04.4 [8,630 B] 2% [5 libatomic1 8,630 B/8,630 B 100%] 2% [Working] Get:6 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libitm1 amd64 4.8.4-2ubuntu1~14.04.4 [28.6 kB] 2% [6 libitm1 28.6 kB/28.6 kB 100%] 3% [Waiting for headers] Get:7 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgomp1 amd64 4.8.4-2ubuntu1~14.04.4 [23.1 kB] 3% [7 libgomp1 23.1 kB/23.1 kB 100%] 3% [Working] Get:8 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libasan0 amd64 4.8.4-2ubuntu1~14.04.4 [63.1 kB] 3% [8 libasan0 23.5 kB/63.1 kB 37%] 3% [Working] Get:9 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libtsan0 amd64 4.8.4-2ubuntu1~14.04.4 [94.8 kB] 3% [9 libtsan0 24.8 kB/94.8 kB 26%] 4% [Working] Get:10 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libquadmath0 amd64 4.8.4-2ubuntu1~14.04.4 [126 kB] 4% [10 libquadmath0 20.7 kB/126 kB 16%] 4% [Working] Get:11 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 g++-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [18.0 MB] 4% [11 g++-4.8 28.4 kB/18.0 MB 0%] 28% [Working] Get:12 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 gcc-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [5,040 kB] 28% [12 gcc-4.8 51.2 kB/5,040 kB 1%] 35% [Working] Get:13 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 cpp-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [4,452 kB] 35% [13 cpp-4.8 57.2 kB/4,452 kB 1%] 41% [Working] Get:14 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libstdc++-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [1,051 kB] 41% [14 libstdc++-4.8-dev 19.9 kB/1,051 kB 2%] 43% [Working] Get:15 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgcc-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [1,688 kB] 43% [15 libgcc-4.8-dev 45.0 kB/1,688 kB 3%] 46% [Working] Get:16 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 gcc-4.8-base amd64 4.8.4-2ubuntu1~14.04.4 [16.7 kB] 46% [16 gcc-4.8-base 16.7 kB/16.7 kB 100%] 46% [Working] Get:17 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libstdc++6 amd64 4.8.4-2ubuntu1~14.04.4 [260 kB] 46% [17 libstdc++6 56.5 kB/260 kB 22%] 47% [Working] Get:18 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgfortran3 amd64 4.8.4-2ubuntu1~14.04.4 [248 kB] 47% [18 libgfortran3 51.7 kB/248 kB 21%] 47% [Working] Get:19 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libicu-dev amd64 52.1-3ubuntu0.8 [7,615 kB] 47% [19 libicu-dev 65.5 kB/7,615 kB 1%] 58% [Working] Get:20 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 icu-devtools amd64 52.1-3ubuntu0.8 [163 kB] 58% [20 icu-devtools 58.5 kB/163 kB 36%] 58% [Working] Get:21 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libicu52 amd64 52.1-3ubuntu0.8 [6,751 kB] 58% [21 libicu52 26.5 kB/6,751 kB 0%] 67% [Working] Get:22 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libqpdf21 amd64 8.0.2-3~14.04.1 [313 kB] 67% [22 libqpdf21 25.0 kB/313 kB 8%] 68% [Working] Get:23 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 libssh2-1 amd64 1.4.3-2ubuntu0.1 [66.4 kB] 68% [23 libssh2-1 39.5 kB/66.4 kB 59%] 68% [Working] Get:24 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 intltool-debian all 0.35.0+20060710.1 [31.6 kB] 68% [24 intltool-debian 31.6 kB/31.6 kB 100%] 69% [Working] Get:25 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] 69% [25 po-debconf 65.5 kB/210 kB 31%] 69% [Working] Get:26 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 dh-apparmor all 2.10.95-0ubuntu2.6~14.04.4 [11.3 kB] 69% [26 dh-apparmor 11.3 kB/11.3 kB 100%] 70% [Working] Get:27 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 debhelper all 9.20131227ubuntu1 [604 kB] 70% [27 debhelper 24.9 kB/604 kB 4%] 71% [Working] Get:28 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 liburi-perl all 1.60-1 [89.6 kB] 71% [28 liburi-perl 23.5 kB/89.6 kB 26%] 71% [Working] Get:29 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libencode-locale-perl all 1.03-1 [12.4 kB] 71% [29 libencode-locale-perl 12.4 kB/12.4 kB 100%] 71% [Working] Get:30 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] 71% [30 libhttp-date-perl 10.4 kB/10.4 kB 100%] 72% [Working] Get:31 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libfile-listing-perl all 6.04-1 [9,774 B] 72% [31 libfile-listing-perl 9,774 B/9,774 B 100%] 72% [Working] Get:32 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] 72% [32 libhtml-tagset-perl 13.5 kB/13.5 kB 100%] 72% [Working] Get:33 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-parser-perl amd64 3.71-1build1 [98.2 kB] 72% [33 libhtml-parser-perl 10.9 kB/98.2 kB 11%] 73% [Working] Get:34 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhtml-tree-perl all 5.03-1 [215 kB] 73% [34 libhtml-tree-perl 26.1 kB/215 kB 12%] 73% [Working] Get:35 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libio-html-perl all 1.00-1 [15.7 kB] 73% [35 libio-html-perl 15.7 kB/15.7 kB 100%] 74% [Working] Get:36 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] 74% [36 liblwp-mediatypes-perl 21.7 kB/21.7 kB 100%] 74% [Working] Get:37 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-message-perl all 6.06-1 [78.7 kB] 74% [37 libhttp-message-perl 57.3 kB/78.7 kB 73%] 74% [Working] Get:38 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-cookies-perl all 6.00-2 [23.3 kB] 74% [38 libhttp-cookies-perl 23.3 kB/23.3 kB 100%] 75% [Waiting for headers] Get:39 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] 75% [39 libhttp-negotiate-perl 13.4 kB/13.4 kB 100%] 75% [Working] Get:40 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libnet-ssleay-perl amd64 1.58-1 [243 kB] 75% [40 libnet-ssleay-perl 14.5 kB/243 kB 6%] 76% [Working] Get:41 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] 76% [41 libio-socket-ssl-perl 24.9 kB/73.7 kB 34%] 76% [Working] Get:42 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libnet-http-perl all 6.06-1 [24.2 kB] 76% [42 libnet-http-perl 24.2 kB/24.2 kB 100%] 76% [Working] Get:43 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 liblwp-protocol-https-perl all 6.04-2ubuntu0.1 [7,644 B] 76% [43 liblwp-protocol-https-perl 7,644 B/7,644 B 100%] 77% [Waiting for headers] Get:44 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] 77% [44 libwww-robotrules-perl 14.1 kB/14.1 kB 100%] 77% [Working] Get:45 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libwww-perl all 6.05-2 [146 kB] 77% [45 libwww-perl 36.9 kB/146 kB 25%] 78% [Working] Get:46 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-parser-perl amd64 2.41-1build3 [294 kB] 78% [46 libxml-parser-perl 23.5 kB/294 kB 8%] 78% [Working] Get:47 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 intltool all 0.50.2-2 [52.0 kB] 78% [47 intltool 24.2 kB/52.0 kB 47%] 79% [Working] Get:48 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 dh-translations all 121 [21.6 kB] 79% [48 dh-translations 8,493 B/21.6 kB 39%] 79% [Waiting for headers] Get:49 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 python-scour all 0.26-3build1 [40.5 kB] 79% [49 python-scour 40.5 kB/40.5 kB 100%] 79% [Working] Get:50 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 cdbs all 0.4.122ubuntu2 [42.1 kB] 79% [50 cdbs 36.9 kB/42.1 kB 88%] 80% [Working] Get:51 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libgfortran-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [268 kB] 80% [51 libgfortran-4.8-dev 25.3 kB/268 kB 9%] 80% [Working] Get:52 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 gfortran-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [4,733 kB] 80% [52 gfortran-4.8 2,402 B/4,733 kB 0%] 87% [Working] Get:53 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 gfortran amd64 4:4.8.2-1ubuntu6 [1,252 B] 87% [53 gfortran 1,252 B/1,252 B 100%] 87% [Waiting for headers] Get:54 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libblas3 amd64 1.2.20110419-7 [215 kB] 87% [54 libblas3 36.9 kB/215 kB 17%] 88% [Working] Get:55 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libblas-dev amd64 1.2.20110419-7 [240 kB] 88% [55 libblas-dev 23.1 kB/240 kB 10%] 88% [Working] Get:56 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libintl-perl all 1.23-1build1 [1,204 kB] 88% [56 libintl-perl 14.2 kB/1,204 kB 1%] 90% [Working] Get:57 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 liblapack3 amd64 3.5.0-2ubuntu1 [1,730 kB] 90% [57 liblapack3 55.2 kB/1,730 kB 3%] 93% [Working] Get:58 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 liblapack-dev amd64 3.5.0-2ubuntu1 [1,740 kB] 93% [58 liblapack-dev 15.1 kB/1,740 kB 1%] 95% [Working] Get:59 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/universe amd64 libssh2-1-dev amd64 1.4.3-2ubuntu0.1 [229 kB] 96% [59 libssh2-1-dev 57.6 kB/229 kB 25%] 96% [Working] Get:60 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libtext-unidecode-perl all 0.04-2 [115 kB] 96% [60 libtext-unidecode-perl 24.8 kB/115 kB 22%] 97% [Working] Get:61 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-namespacesupport-perl all 1.11-1 [13.2 kB] 97% [61 libxml-namespacesupport-perl 13.2 kB/13.2 kB 100%] 97% [Working] Get:62 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-sax-base-perl all 1.07-1 [21.5 kB] 97% [62 libxml-sax-base-perl 21.5 kB/21.5 kB 100%] 97% [Working] Get:63 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] 97% [63 libxml-sax-perl 20.5 kB/64.6 kB 32%] 98% [Working] Get:64 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 libxml-libxml-perl amd64 2.0108+dfsg-1ubuntu0.2 [336 kB] 98% [64 libxml-libxml-perl 13.7 kB/336 kB 4%] 98% [Working] Get:65 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty-updates/main amd64 qpdf amd64 8.0.2-3~14.04.1 [243 kB] 98% [65 qpdf 24.2 kB/243 kB 10%] 99% [Working] Get:66 http://us-east-1.ec2.archive.ubuntu.com/ubuntu trusty/main amd64 texinfo amd64 5.2.0.dfsg.1-2 [561 kB] 99% [66 texinfo 15.1 kB/561 kB 3%] 100% [Working] Fetched 60.7 MB in 3s (18.9 MB/s) Extracting templates from packages: 45% Extracting templates from packages: 90% Extracting templates from packages: 100% (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 97797 files and directories currently installed.) Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1.1) over (1:1.2.8.dfsg-1ubuntu1) ... Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-1ubuntu1.1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.8.dfsg-1ubuntu1.1) over (1:1.2.8.dfsg-1ubuntu1) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Setting up zlib1g:amd64 (1:1.2.8.dfsg-1ubuntu1.1) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 97797 files and directories currently installed.) Preparing to unpack .../libpng12-dev_1.2.50-1ubuntu2.14.04.3_amd64.deb ... Unpacking libpng12-dev (1.2.50-1ubuntu2.14.04.3) over (1.2.50-1ubuntu2.14.04.2) ... Preparing to unpack .../libpng12-0_1.2.50-1ubuntu2.14.04.3_amd64.deb ... Unpacking libpng12-0:amd64 (1.2.50-1ubuntu2.14.04.3) over (1.2.50-1ubuntu2.14.04.2) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Setting up libpng12-0:amd64 (1.2.50-1ubuntu2.14.04.3) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 97797 files and directories currently installed.) Preparing to unpack .../libatomic1_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libatomic1:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libitm1_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libitm1:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libgomp1_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libgomp1:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libasan0_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libasan0:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libtsan0_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libtsan0:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libquadmath0_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libquadmath0:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../g++-4.8_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking g++-4.8 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../gcc-4.8_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking gcc-4.8 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../cpp-4.8_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking cpp-4.8 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libstdc++-4.8-dev_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libstdc++-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../libgcc-4.8-dev_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libgcc-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Preparing to unpack .../gcc-4.8-base_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking gcc-4.8-base:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Processing triggers for ccache (3.1.9-1) ... Updating symlinks in /usr/lib/ccache ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Setting up gcc-4.8-base:amd64 (4.8.4-2ubuntu1~14.04.4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 97797 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libstdc++6:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... Setting up libstdc++6:amd64 (4.8.4-2ubuntu1~14.04.4) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... Selecting previously unselected package libgfortran3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 97797 files and directories currently installed.) Preparing to unpack .../libgfortran3_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libgfortran3:amd64 (4.8.4-2ubuntu1~14.04.4) ... Preparing to unpack .../libicu-dev_52.1-3ubuntu0.8_amd64.deb ... Unpacking libicu-dev:amd64 (52.1-3ubuntu0.8) over (52.1-3ubuntu0.7) ... Preparing to unpack .../icu-devtools_52.1-3ubuntu0.8_amd64.deb ... Unpacking icu-devtools (52.1-3ubuntu0.8) over (52.1-3ubuntu0.7) ... Preparing to unpack .../libicu52_52.1-3ubuntu0.8_amd64.deb ... Unpacking libicu52:amd64 (52.1-3ubuntu0.8) over (52.1-3ubuntu0.7) ... Selecting previously unselected package libqpdf21:amd64. Preparing to unpack .../libqpdf21_8.0.2-3~14.04.1_amd64.deb ... Unpacking libqpdf21:amd64 (8.0.2-3~14.04.1) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../libssh2-1_1.4.3-2ubuntu0.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.4.3-2ubuntu0.1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu2ubuntu1_all.deb ... Unpacking po-debconf (1.0.16+nmu2ubuntu1) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.10.95-0ubuntu2.6~14.04.4_all.deb ... Unpacking dh-apparmor (2.10.95-0ubuntu2.6~14.04.4) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20131227ubuntu1_all.deb ... Unpacking debhelper (9.20131227ubuntu1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../liburi-perl_1.60-1_all.deb ... Unpacking liburi-perl (1.60-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../libencode-locale-perl_1.03-1_all.deb ... Unpacking libencode-locale-perl (1.03-1) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../libhttp-date-perl_6.02-1_all.deb ... Unpacking libhttp-date-perl (6.02-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../libfile-listing-perl_6.04-1_all.deb ... Unpacking libfile-listing-perl (6.04-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../libhtml-tagset-perl_3.20-2_all.deb ... Unpacking libhtml-tagset-perl (3.20-2) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../libhtml-parser-perl_3.71-1build1_amd64.deb ... Unpacking libhtml-parser-perl (3.71-1build1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../libhtml-tree-perl_5.03-1_all.deb ... Unpacking libhtml-tree-perl (5.03-1) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../libio-html-perl_1.00-1_all.deb ... Unpacking libio-html-perl (1.00-1) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../liblwp-mediatypes-perl_6.02-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.02-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../libhttp-message-perl_6.06-1_all.deb ... Unpacking libhttp-message-perl (6.06-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../libhttp-cookies-perl_6.00-2_all.deb ... Unpacking libhttp-cookies-perl (6.00-2) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../libhttp-negotiate-perl_6.00-2_all.deb ... Unpacking libhttp-negotiate-perl (6.00-2) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../libnet-ssleay-perl_1.58-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.58-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../libio-socket-ssl-perl_1.965-1ubuntu1_all.deb ... Unpacking libio-socket-ssl-perl (1.965-1ubuntu1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../libnet-http-perl_6.06-1_all.deb ... Unpacking libnet-http-perl (6.06-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../liblwp-protocol-https-perl_6.04-2ubuntu0.1_all.deb ... Unpacking liblwp-protocol-https-perl (6.04-2ubuntu0.1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../libwww-robotrules-perl_6.01-1_all.deb ... Unpacking libwww-robotrules-perl (6.01-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../libwww-perl_6.05-2_all.deb ... Unpacking libwww-perl (6.05-2) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../libxml-parser-perl_2.41-1build3_amd64.deb ... Unpacking libxml-parser-perl (2.41-1build3) ... Selecting previously unselected package intltool. Preparing to unpack .../intltool_0.50.2-2_all.deb ... Unpacking intltool (0.50.2-2) ... Selecting previously unselected package dh-translations. Preparing to unpack .../dh-translations_121_all.deb ... Unpacking dh-translations (121) ... Selecting previously unselected package python-scour. Preparing to unpack .../python-scour_0.26-3build1_all.deb ... Unpacking python-scour (0.26-3build1) ... Selecting previously unselected package cdbs. Preparing to unpack .../cdbs_0.4.122ubuntu2_all.deb ... Unpacking cdbs (0.4.122ubuntu2) ... Selecting previously unselected package libgfortran-4.8-dev:amd64. Preparing to unpack .../libgfortran-4.8-dev_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... Selecting previously unselected package gfortran-4.8. Preparing to unpack .../gfortran-4.8_4.8.4-2ubuntu1~14.04.4_amd64.deb ... Unpacking gfortran-4.8 (4.8.4-2ubuntu1~14.04.4) ... Selecting previously unselected package gfortran. Preparing to unpack .../gfortran_4%3a4.8.2-1ubuntu6_amd64.deb ... Unpacking gfortran (4:4.8.2-1ubuntu6) ... Selecting previously unselected package libblas3. Preparing to unpack .../libblas3_1.2.20110419-7_amd64.deb ... Unpacking libblas3 (1.2.20110419-7) ... Selecting previously unselected package libblas-dev. Preparing to unpack .../libblas-dev_1.2.20110419-7_amd64.deb ... Unpacking libblas-dev (1.2.20110419-7) ... Selecting previously unselected package libintl-perl. Preparing to unpack .../libintl-perl_1.23-1build1_all.deb ... Unpacking libintl-perl (1.23-1build1) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.5.0-2ubuntu1_amd64.deb ... Unpacking liblapack3 (3.5.0-2ubuntu1) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.5.0-2ubuntu1_amd64.deb ... Unpacking liblapack-dev (3.5.0-2ubuntu1) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../libssh2-1-dev_1.4.3-2ubuntu0.1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../libtext-unidecode-perl_0.04-2_all.deb ... Unpacking libtext-unidecode-perl (0.04-2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../libxml-namespacesupport-perl_1.11-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.11-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../libxml-sax-base-perl_1.07-1_all.deb ... Unpacking libxml-sax-base-perl (1.07-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../libxml-sax-perl_0.99+dfsg-2ubuntu1_all.deb ... Unpacking libxml-sax-perl (0.99+dfsg-2ubuntu1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../libxml-libxml-perl_2.0108+dfsg-1ubuntu0.2_amd64.deb ... Unpacking libxml-libxml-perl (2.0108+dfsg-1ubuntu0.2) ... Selecting previously unselected package qpdf. Preparing to unpack .../qpdf_8.0.2-3~14.04.1_amd64.deb ... Unpacking qpdf (8.0.2-3~14.04.1) ... Selecting previously unselected package texinfo. Preparing to unpack .../texinfo_5.2.0.dfsg.1-2_amd64.deb ... Unpacking texinfo (5.2.0.dfsg.1-2) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... Processing triggers for ccache (3.1.9-1) ... Updating symlinks in /usr/lib/ccache ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1.1) ... Setting up libpng12-dev (1.2.50-1ubuntu2.14.04.3) ... Setting up libatomic1:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libitm1:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libgomp1:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libasan0:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libtsan0:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libquadmath0:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up cpp-4.8 (4.8.4-2ubuntu1~14.04.4) ... Setting up libgcc-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up gcc-4.8 (4.8.4-2ubuntu1~14.04.4) ... Setting up libstdc++-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up g++-4.8 (4.8.4-2ubuntu1~14.04.4) ... Setting up libgfortran3:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up libicu52:amd64 (52.1-3ubuntu0.8) ... Setting up icu-devtools (52.1-3ubuntu0.8) ... Setting up libicu-dev:amd64 (52.1-3ubuntu0.8) ... Setting up libqpdf21:amd64 (8.0.2-3~14.04.1) ... Setting up libssh2-1:amd64 (1.4.3-2ubuntu0.1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.10.95-0ubuntu2.6~14.04.4) ... Setting up debhelper (9.20131227ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.58-1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3build1) ... Setting up libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... Setting up gfortran-4.8 (4.8.4-2ubuntu1~14.04.4) ... Setting up gfortran (4:4.8.2-1ubuntu6) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up libblas3 (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libintl-perl (1.23-1build1) ... Setting up liblapack3 (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.5.0-2ubuntu1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libssh2-1-dev:amd64 (1.4.3-2ubuntu0.1) ... Setting up libtext-unidecode-perl (0.04-2) ... Setting up libxml-namespacesupport-perl (1.11-1) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0108+dfsg-1ubuntu0.2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up qpdf (8.0.2-3~14.04.1) ... Setting up texinfo (5.2.0.dfsg.1-2) ... Setting up liblwp-protocol-https-perl (6.04-2ubuntu0.1) ... Setting up libwww-perl (6.05-2) ... Setting up libxml-parser-perl (2.41-1build3) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.122ubuntu2) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... travis_time:end:11602cc4:start=1548948598268948439,finish=1548948617367091795,duration=19098143356 travis_time:start:077f7563 $ curl -fLo /tmp/R-3.5.2-$(lsb_release -cs).xz https://travis-ci.rstudio.org/R-3.5.2-$(lsb_release -cs).xz travis_time:end:077f7563:start=1548948617373713248,finish=1548948619189251699,duration=1815538451 travis_time:start:1bbeacde $ tar xJf /tmp/R-3.5.2-$(lsb_release -cs).xz -C ~ travis_time:end:1bbeacde:start=1548948619194960524,finish=1548948622947351686,duration=3752391162 $ rm /tmp/R-3.5.2-$(lsb_release -cs).xz travis_time:start:0ac73b68 $ sudo mkdir -p /usr/local/lib/R/site-library $R_LIBS_USER travis_time:end:0ac73b68:start=1548948623000958126,finish=1548948623009376069,duration=8417943 travis_time:start:0467a1d1 $ sudo chmod 2777 /usr/local/lib/R /usr/local/lib/R/site-library $R_LIBS_USER travis_time:end:0467a1d1:start=1548948623014685801,finish=1548948623023401923,duration=8716122 travis_time:start:1e6ed558 $ echo 'options(repos = c(CRAN = "https://cloud.r-project.org"))' > ~/.Rprofile.site travis_time:end:1e6ed558:start=1548948623028371033,finish=1548948623031951388,duration=3580355 travis_time:start:05a05f57 $ curl -fLo /tmp/texlive.tar.gz https://github.com/jimhester/ubuntu-bin/releases/download/latest/texlive.tar.gz travis_time:end:05a05f57:start=1548948623038705470,finish=1548948626580372940,duration=3541667470 travis_time:start:1265d6ce $ tar xzf /tmp/texlive.tar.gz -C ~ travis_time:end:1265d6ce:start=1548948626588995753,finish=1548948628701944370,duration=2112948617 $ export PATH=${TRAVIS_HOME}/texlive/bin/x86_64-linux:$PATH travis_time:start:0ce891a8 $ tlmgr update --self tlmgr: package repository http://ftp.math.purdue.edu/mirrors/ctan.org/systems/texlive/tlnet (verified) tlmgr: saving backups to /home/travis/texlive/tlpkg/backups [1/2, ??:??/??:??] update: texlive.infra [209k] (44424 -> 49228) ... done [2/2, 00:01/00:01] update: texlive.infra.x86_64-linux [146k] (43804 -> 47820) ... done running mktexlsr ... done running mktexlsr. tlmgr: package log updated: /home/travis/texlive/texmf-var/web2c/tlmgr.log travis_time:end:0ce891a8:start=1548948628710154542,finish=1548948633122604066,duration=4412449524 travis_time:start:021768de $ curl -fLo /tmp/pandoc-2.2-1-amd64.deb https://github.com/jgm/pandoc/releases/download/2.2/pandoc-2.2-1-amd64.deb travis_time:end:021768de:start=1548948633128545682,finish=1548948634004844605,duration=876298923 travis_time:start:03ecd7db $ sudo dpkg -i /tmp/pandoc-2.2-1-amd64.deb Selecting previously unselected package pandoc. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99966 files and directories currently installed.) Preparing to unpack /tmp/pandoc-2.2-1-amd64.deb ... Unpacking pandoc (2.2-1) ... Setting up pandoc (2.2-1) ... Processing triggers for man-db (2.6.7.1-1ubuntu1) ... travis_time:end:03ecd7db:start=1548948634011032435,finish=1548948637256845098,duration=3245812663 travis_time:start:2136a272 $ sudo apt-get install -f Reading package lists... 0% Reading package lists... 0% Reading package lists... 8% Reading package lists... Done Building dependency tree... 0% Building dependency tree... 0% Building dependency tree... 50% Building dependency tree... 50% Building dependency tree Reading state information... 0% Reading state information... 0% Reading state information... Done 0 upgraded, 0 newly installed, 0 to remove and 270 not upgraded. travis_time:end:2136a272:start=1548948637263331703,finish=1548948638011650382,duration=748318679 $ rm /tmp/pandoc-2.2-1-amd64.deb travis_fold:end:R-install travis_fold:start:apt Adding APT Sources travis_time:start:000bf650 $ sudo -E apt-add-repository -y "ppa:ubuntu-toolchain-r/test" gpg: keyring `/tmp/tmpv_y3zwxd/secring.gpg' created gpg: keyring `/tmp/tmpv_y3zwxd/pubring.gpg' created gpg: requesting key BA9EF27F from hkp server keyserver.ubuntu.com gpg: /tmp/tmpv_y3zwxd/trustdb.gpg: trustdb created gpg: key BA9EF27F: public key "Launchpad Toolchain builds" imported gpg: Total number processed: 1 gpg: imported: 1 (RSA: 1) OK travis_time:end:000bf650:start=1548948638022515018,finish=1548948639633266864,duration=1610751846 Installing APT Packages travis_time:start:028321a4 $ travis_apt_get_update travis_time:end:028321a4:start=1548948639639811602,finish=1548948668969910590,duration=29330098988 travis_time:start:23cdda90 $ sudo -E apt-get -yq --no-install-suggests --no-install-recommends $(travis_apt_get_options) install gcc-4.9 g++-4.9 Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: cpp-4.9 gcc-4.9-base gcc-7-base gcc-8-base libasan1 libatomic1 libcilkrts5 libgcc-4.9-dev libgcc1 libgomp1 libisl15 libitm1 liblsan0 libmpfr4 libquadmath0 libstdc++-4.9-dev libstdc++6 libtsan0 libubsan0 Suggested packages: gcc-4.9-locales g++-4.9-multilib gcc-4.9-doc libstdc++6-4.9-dbg gcc-4.9-multilib libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath0-dbg libstdc++-4.9-doc The following NEW packages will be installed: cpp-4.9 g++-4.9 gcc-4.9 gcc-7-base gcc-8-base libasan1 libcilkrts5 libgcc-4.9-dev libisl15 liblsan0 libstdc++-4.9-dev libubsan0 The following packages will be upgraded: gcc-4.9-base libatomic1 libgcc1 libgomp1 libitm1 libmpfr4 libquadmath0 libstdc++6 libtsan0 9 upgraded, 12 newly installed, 0 to remove and 281 not upgraded. Need to get 37.5 MB of archives. After this operation, 96.2 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 gcc-8-base amd64 8.1.0-5ubuntu1~14.04 [18.3 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libgcc1 amd64 1:8.1.0-5ubuntu1~14.04 [40.7 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libstdc++6 amd64 8.1.0-5ubuntu1~14.04 [310 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 gcc-4.9-base amd64 4.9.4-2ubuntu1~14.04.1 [15.3 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libasan1 amd64 4.9.4-2ubuntu1~14.04.1 [189 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libatomic1 amd64 8.1.0-5ubuntu1~14.04 [9,082 B] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 gcc-7-base amd64 7.4.0-1ubuntu1~14.04~ppa1 [18.7 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libcilkrts5 amd64 7.4.0-1ubuntu1~14.04~ppa1 [42.3 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libgomp1 amd64 8.1.0-5ubuntu1~14.04 [75.9 kB] Get:10 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libisl15 amd64 0.15-3~14.04 [507 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libitm1 amd64 8.1.0-5ubuntu1~14.04 [27.9 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 liblsan0 amd64 8.1.0-5ubuntu1~14.04 [131 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libmpfr4 amd64 3.1.3-1~14.04 [178 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libquadmath0 amd64 8.1.0-5ubuntu1~14.04 [133 kB] Get:15 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libtsan0 amd64 8.1.0-5ubuntu1~14.04 [284 kB] Get:16 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libubsan0 amd64 7.4.0-1ubuntu1~14.04~ppa1 [124 kB] Get:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 cpp-4.9 amd64 4.9.4-2ubuntu1~14.04.1 [5,198 kB] Get:18 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libgcc-4.9-dev amd64 4.9.4-2ubuntu1~14.04.1 [2,067 kB] Get:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 gcc-4.9 amd64 4.9.4-2ubuntu1~14.04.1 [5,694 kB] Get:20 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 libstdc++-4.9-dev amd64 4.9.4-2ubuntu1~14.04.1 [1,126 kB] Get:21 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu trusty/main amd64 g++-4.9 amd64 4.9.4-2ubuntu1~14.04.1 [21.3 MB] Fetched 37.5 MB in 2min 48s (223 kB/s) Selecting previously unselected package gcc-8-base:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99973 files and directories currently installed.) Preparing to unpack .../gcc-8-base_8.1.0-5ubuntu1~14.04_amd64.deb ... Unpacking gcc-8-base:amd64 (8.1.0-5ubuntu1~14.04) ... Processing triggers for ccache (3.1.9-1) ... Updating symlinks in /usr/lib/ccache ... Setting up gcc-8-base:amd64 (8.1.0-5ubuntu1~14.04) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99979 files and directories currently installed.) Preparing to unpack .../libstdc++6_8.1.0-5ubuntu1~14.04_amd64.deb ... Unpacking libstdc++6:amd64 (8.1.0-5ubuntu1~14.04) over (4.8.4-2ubuntu1~14.04.4) ... Setting up libstdc++6:amd64 (8.1.0-5ubuntu1~14.04) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 99980 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.4-2ubuntu1~14.04.1_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.4-2ubuntu1~14.04.1) over (4.9.3-0ubuntu4) ... Selecting previously unselected package libasan1:amd64. Preparing to unpack .../libasan1_4.9.4-2ubuntu1~14.04.1_amd64.deb ... Unpacking libasan1:amd64 (4.9.4-2ubuntu1~14.04.1) ... Preparing to unpack .../libatomic1_8.1.0-5ubuntu1~14.04_amd64.deb ... 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Setting up gcc-7-base:amd64 (7.4.0-1ubuntu1~14.04~ppa1) ... Setting up libcilkrts5:amd64 (7.4.0-1ubuntu1~14.04~ppa1) ... Setting up libgomp1:amd64 (8.1.0-5ubuntu1~14.04) ... Setting up libisl15:amd64 (0.15-3~14.04) ... Setting up libitm1:amd64 (8.1.0-5ubuntu1~14.04) ... Setting up liblsan0:amd64 (8.1.0-5ubuntu1~14.04) ... Setting up libmpfr4:amd64 (3.1.3-1~14.04) ... Setting up libquadmath0:amd64 (8.1.0-5ubuntu1~14.04) ... Setting up libtsan0:amd64 (8.1.0-5ubuntu1~14.04) ... Setting up libubsan0:amd64 (7.4.0-1ubuntu1~14.04~ppa1) ... Setting up cpp-4.9 (4.9.4-2ubuntu1~14.04.1) ... Setting up libgcc-4.9-dev:amd64 (4.9.4-2ubuntu1~14.04.1) ... Setting up gcc-4.9 (4.9.4-2ubuntu1~14.04.1) ... Setting up libstdc++-4.9-dev:amd64 (4.9.4-2ubuntu1~14.04.1) ... Setting up g++-4.9 (4.9.4-2ubuntu1~14.04.1) ... Processing triggers for libc-bin (2.19-0ubuntu6.13) ... travis_time:end:23cdda90:start=1548948668975912809,finish=1548948843630584071,duration=174654671262 travis_fold:end:apt travis_fold:start:ssh_key Installing SSH key from: default repository key Key fingerprint: 3a:db:a0:47:0a:93:8f:98:9a:98:c3:22:30:07:39:8b travis_fold:end:ssh_key Using /home/travis/.netrc to clone repository. travis_fold:start:git.checkout travis_time:start:12fb5d4e $ git clone --depth=50 --branch=setup https://github.com/cdash04/vitrine-parlementaire.git cdash04/vitrine-parlementaire Cloning into 'cdash04/vitrine-parlementaire'... remote: Enumerating objects: 113, done. remote: Counting objects: 0% (1/113)  remote: Counting objects: 1% (2/113)  remote: Counting objects: 2% (3/113)  remote: Counting objects: 3% (4/113)  remote: Counting objects: 4% (5/113)  remote: Counting objects: 5% (6/113)  remote: Counting objects: 6% (7/113)  remote: Counting objects: 7% (8/113)  remote: Counting objects: 8% (10/113)  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(54/72)  remote: Compressing objects: 76% (55/72)  remote: Compressing objects: 77% (56/72)  remote: Compressing objects: 79% (57/72)  remote: Compressing objects: 80% (58/72)  remote: Compressing objects: 81% (59/72)  remote: Compressing objects: 83% (60/72)  remote: Compressing objects: 84% (61/72)  remote: Compressing objects: 86% (62/72)  remote: Compressing objects: 87% (63/72)  remote: Compressing objects: 88% (64/72)  remote: Compressing objects: 90% (65/72)  remote: Compressing objects: 91% (66/72)  remote: Compressing objects: 93% (67/72)  remote: Compressing objects: 94% (68/72)  remote: Compressing objects: 95% (69/72)  remote: Compressing objects: 97% (70/72)  remote: Compressing objects: 98% (71/72)  remote: Compressing objects: 100% (72/72)  remote: Compressing objects: 100% (72/72), done. Receiving objects: 0% (1/113) Receiving objects: 1% (2/113) Receiving objects: 2% (3/113) Receiving objects: 3% (4/113) Receiving objects: 4% (5/113) Receiving objects: 5% (6/113) Receiving objects: 6% (7/113) Receiving objects: 7% (8/113) Receiving objects: 8% (10/113) Receiving objects: 9% (11/113) Receiving objects: 10% (12/113) Receiving objects: 11% (13/113) Receiving objects: 12% (14/113) Receiving objects: 13% (15/113) Receiving objects: 14% (16/113) Receiving objects: 15% (17/113) Receiving objects: 16% (19/113) Receiving objects: 17% (20/113) Receiving objects: 18% (21/113) Receiving objects: 19% (22/113) Receiving objects: 20% (23/113) Receiving objects: 21% (24/113) Receiving objects: 22% (25/113) Receiving objects: 23% (26/113) Receiving objects: 24% (28/113) Receiving objects: 25% (29/113) Receiving objects: 26% (30/113) Receiving objects: 27% (31/113) Receiving objects: 28% (32/113) Receiving objects: 29% (33/113) Receiving objects: 30% (34/113), 5.22 MiB | 10.36 MiB/s Receiving objects: 31% (36/113), 5.22 MiB | 10.36 MiB/s Receiving objects: 32% (37/113), 5.22 MiB | 10.36 MiB/s Receiving objects: 33% (38/113), 5.22 MiB | 10.36 MiB/s Receiving objects: 34% (39/113), 5.22 MiB | 10.36 MiB/s Receiving objects: 34% (39/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 35% (40/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 36% (41/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 37% (42/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 38% (43/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 39% (45/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 40% (46/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 41% (47/113), 11.15 MiB | 10.99 MiB/s Receiving objects: 42% (48/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 43% (49/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 44% (50/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 45% (51/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 46% (52/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 47% (54/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 48% (55/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 49% (56/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 50% (57/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 51% (58/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 52% (59/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 53% (60/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 54% (62/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 55% (63/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 56% (64/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 57% (65/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 58% (66/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 59% (67/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 60% (68/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 61% (69/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 62% (71/113), 15.65 MiB | 10.33 MiB/s Receiving objects: 62% (71/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 63% (72/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 64% (73/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 65% (74/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 66% (75/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 67% (76/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 68% (77/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 69% (78/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 70% (80/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 71% (81/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 72% (82/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 73% (83/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 74% (84/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 75% (85/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 76% (86/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 77% (88/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 78% (89/113), 20.35 MiB | 10.09 MiB/s Receiving objects: 79% (90/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 80% (91/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 81% (92/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 82% (93/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 83% (94/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 84% (95/113), 25.22 MiB | 10.01 MiB/s remote: Total 113 (delta 23), reused 92 (delta 11), pack-reused 0 Receiving objects: 85% (97/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 86% (98/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 87% (99/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 88% (100/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 89% (101/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 90% (102/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 91% (103/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 92% (104/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 93% (106/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 94% (107/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 95% (108/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 96% (109/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 97% (110/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 98% (111/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 99% (112/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 100% (113/113), 25.22 MiB | 10.01 MiB/s Receiving objects: 100% (113/113), 25.61 MiB | 10.03 MiB/s, done. Resolving deltas: 0% (0/23) Resolving deltas: 21% (5/23) Resolving deltas: 26% (6/23) Resolving deltas: 47% (11/23) Resolving deltas: 56% (13/23) Resolving deltas: 65% (15/23) Resolving deltas: 69% (16/23) Resolving deltas: 100% (23/23) Resolving deltas: 100% (23/23), done. travis_time:end:12fb5d4e:start=1548948843663552479,finish=1548948849461960842,duration=5798408363 $ cd cdash04/vitrine-parlementaire $ git checkout -qf 4c740e0ec472132133f011e233349669a055f999 travis_fold:end:git.checkout  Setting environment variables from .travis.yml $ export CRAN=http://cran.rstudio.com travis_fold:start:cache.1 Setting up build cache $ export CASHER_DIR=${TRAVIS_HOME}/.casher travis_time:start:08053323 $ Installing caching utilities travis_time:end:08053323:start=1548948854423768703,finish=1548948854581671008,duration=157902305 travis_time:start:0a10e998 travis_time:end:0a10e998:start=1548948854589841858,finish=1548948854593923238,duration=4081380 travis_time:start:027b3395 attempting to download cache archive fetching setup/cache-linux-trusty-e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855--R-3.5.2.tgz fetching setup/cache--R-3.5.2.tgz fetching master/cache-linux-trusty-e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855--R-3.5.2.tgz fetching master/cache--R-3.5.2.tgz could not download cache travis_time:end:027b3395:start=1548948854600958538,finish=1548948856197852336,duration=1596893798 travis_time:start:1aebbb0b travis_time:end:1aebbb0b:start=1548948856204790107,finish=1548948856209308802,duration=4518695 travis_time:start:2a237ffb adding /home/travis/build/cdash04/vitrine-parlementaire/_bookdown_files to cache creating directory /home/travis/build/cdash04/vitrine-parlementaire/_bookdown_files adding /home/travis/build/cdash04/vitrine-parlementaire/packrat to cache travis_time:end:2a237ffb:start=1548948856215959607,finish=1548948857335541396,duration=1119581789 travis_fold:end:cache.1  travis_fold:start:package Setting up package cache travis_time:start:14e12a68 travis_time:end:14e12a68:start=1548948857342990656,finish=1548948857348372031,duration=5381375 travis_time:start:0c6ce4e4 adding /home/travis/R/Library to cache creating directory /home/travis/R/Library travis_time:end:0c6ce4e4:start=1548948857355915692,finish=1548948858462957047,duration=1107041355 travis_fold:end:package travis_fold:start:R-session-info R session information $ Rscript -e 'sessionInfo()' R version 3.5.2 (2017-01-27) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.5 LTS Matrix products: default BLAS: /home/travis/R-bin/lib/R/lib/libRblas.so LAPACK: /home/travis/R-bin/lib/R/lib/libRlapack.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.5.2 travis_fold:end:R-session-info travis_fold:start:before_install travis_time:start:20035f0e $ mkdir ~/.R cat < ~/.R/Makevars CXX1X=g++-4.9 CXX1XSTD=-std=c++11 /home/travis/.travis/job_stages: line 108: warning: here-document at line 105 delimited by end-of-file (wanted `EOF') travis_time:end:20035f0e:start=1548948858650061094,finish=1548948858658415271,duration=8354177 travis_fold:end:before_install travis_fold:start:install.1 travis_time:start:09a61f6f $ R -e "0" --args --bootstrap-packrat R version 3.5.2 (2017-01-27) -- "Eggshell Igloo" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. Packrat is not installed in the local library -- attempting to bootstrap an installation... > Installing packrat into project private library: - 'packrat/lib/x86_64-pc-linux-gnu/3.5.2' * installing *source* package ‘packrat’ ... ** package ‘packrat’ successfully unpacked and MD5 sums checked ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (packrat) > Attaching packrat > Restoring library Installing BH (1.65.0-1) ... OK (built source) Installing DBI (0.7) ... OK (built source) Installing R6 (2.2.2) ... OK (built source) Installing Rcpp (0.12.14) ... [1] "Command failed (1)\n\nFailed to run system command:\n\n\t'/home/travis/R-bin/lib/R/bin/R' --vanilla CMD INSTALL '/tmp/Rtmp3XVHlj/Rcpp' --library='/home/travis/build/cdash04/vitrine-parlementaire/packrat/lib/x86_64-pc-linux-gnu/3.5.2' --install-tests --no-docs --no-multiarch --no-demo \n\nThe command failed with output:\n* installing *source* package 'Rcpp' ...\n** package 'Rcpp' successfully unpacked and MD5 sums checked\n** libs\ng++ -I\"/home/travis/R-bin/lib/R/include\" -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c Date.cpp -o Date.o\nIn file included from ../inst/include/Rcpp.h:79:0,\n from Date.cpp:31:\n../inst/include/Rcpp/Rmath.h: In function 'double R::pythag(double, double)':\n../inst/include/Rcpp/Rmath.h:222:55: error: '::Rf_pythag' has not been declared\n inline double pythag(double a, double b) { return ::Rf_pythag(a, b); }\n ^\nmake: *** [Date.o] Error 1\nERROR: compilation failed for package 'Rcpp'\n* removing '/home/travis/build/cdash04/vitrine-parlementaire/packrat/lib/x86_64-pc-linux-gnu/3.5.2/Rcpp'" Error: Command failed (1) Failed to run system command: '/home/travis/R-bin/lib/R/bin/R' --vanilla CMD INSTALL '/tmp/Rtmp3XVHlj/Rcpp' --library='/home/travis/build/cdash04/vitrine-parlementaire/packrat/lib/x86_64-pc-linux-gnu/3.5.2' --install-tests --no-docs --no-multiarch --no-demo The command failed with output: * installing *source* package 'Rcpp' ... ** package 'Rcpp' successfully unpacked and MD5 sums checked ** libs g++ -I"/home/travis/R-bin/lib/R/include" -DNDEBUG -I../inst/include/ -I/home/travis/R-bin/include -fpic -g -O2 -c Date.cpp -o Date.o In file included from ../inst/include/Rcpp.h:79:0, from Date.cpp:31: ../inst/include/Rcpp/Rmath.h: In function 'double R::pythag(double, double)': ../inst/include/Rcpp/Rmath.h:222:55: error: '::Rf_pythag' has not been declared inline double pythag(double a, double b) { return ::Rf_pythag(a, b); } ^ make: *** [Date.o] Error 1 ERROR: compilation failed In addition: Warning message: In packrat::restore(prompt = FALSE, restart = FALSE) : The most recent snapshot was generated using R version 3.3.2 Execution halted travis_time:end:09a61f6f:start=1548948858665886554,finish=1548948886729054136,duration=28063167582 The command "R -e "0" --args --bootstrap-packrat" failed and exited with 1 during . Your build has been stopped.